...
GREAT uses numerous ontologies covering a wide range of topics, which allows you to examine many aspects of your input set. Currently, GREAT version 4.0 includes the Gene Ontology (GO) and other ontologies covering phenotypes and human disease, pathways, gene expression, regulatory motifs, and gene familiesand mouse phenotypes. Some additional ontologies are supported in the previous versions.
What statistics are given for each ontology listed below?
...
- Transcription Factor Targets - genes identified by a transcription factor ChIP-chip experiment
- MSigDB Predicted Promoter Motifs - gene sets that share a transcription factor binding motif
- MSigDB miRNA Motifs - gene sets that share a 3'-UTR microRNA binding motif
- miRNA MiRNA Targets - genes that are downregulated in a microRNA overexpression experiment
...
- Transcription Factor Targets - genes identified by a transcription factor ChIP-chip experiment
- MSigDB Predicted Promoter Motifs - gene sets that share a transcription factor binding motif
- MSigDB miRNA Motifs - gene sets that share a 3'-UTR microRNA binding motif
- miRNA MiRNA Targets - genes that are downregulated in a microRNA overexpression experiment
...