Gene Ontology (GO)
- GO Molecular Function
- GO Biological Process
- GO Cellular Component
- GO Molecular Function v1.8
- GO Biological Process v1.8
- GO Cellular Component v1.8
Phenotype Data and Human Disease
- Mouse Phenotype - data about mouse genotype - phenotype associations mapped to human genes
- Human Phenotype - data of human phenotypes mapped to human genes
- Disease Ontology - data linking human diseases to associated genes
- MSigDB Cancer Neighborhood - gene sets defined by correlated expression profiles with cancer-associated genes
- Zebrafish Phenotype - data about zebrafish genotype - phenotype associations primarily obtained by curators from the literature
- Mouse Phenotype v1.8 - data about mouse genotype - phenotype associations mapped to human genes
- Human Phenotype v1.8 - data of human phenotypes mapped to human genes
- Disease Ontology v1.8 - data linking human diseases to associated genes
- MSigDB Cancer Neighborhood v1.8 - gene sets defined by correlated expression profiles with cancer-associated genes
- Zebrafish Phenotype v1.8 - data about zebrafish genotype - phenotype associations primarily obtained by curators from the literature
Pathway Data
- PANTHER Pathway - primarily signaling pathways
- Pathway Commons - a collection of pathways from multiple sources
- BioCyc Pathway - metabolic pathways
- MSigDB Pathway - gene sets from pathway databases
- Wiki Pathways - zebrafish pathway data
Gene Expression
- MGI Expression___Detected - genes detected as expressed in data with a focus on gene expression during mouse development
- MSigDB Perturbation - gene sets that change their expression after genetic and chemical perturbations
- Zebrafish Wildtype Expression - genes detected as expressed in wildtype zebrafish during development
Regulatory Motifs
- Transcription Factor Targets - genes identified by a transcription factor ChIP-chip experiment
- MSigDB Predicted Promoter Motifs - gene sets that share a transcription factor binding motif
- MSigDB miRNA Motifs - gene sets that share a 3'-UTR microRNA binding motif
- miRNA Targets - genes that are downregulated in a microRNA overexpression experiment
Gene Families
- InterPro - protein domains, families and functional sites
- TreeFam - gene families of paralogs
- HGNC Gene Families - gene sets based on sequence similarity, data from the literature, and manual curation