GREAT v1.8 Ontologies

GO Molecular Function v1.8

GO Biological Process v1.8

GO Cellular Component v1.8

Mouse Phenotype v1.8 - data about mouse genotype - phenotype associations mapped to human genes

Human Phenotype v1.8 - data of human phenotypes mapped to human genes

Disease Ontology v1.8 - data linking human diseases to associated genes

MSigDB Cancer Neighborhood v1.8 - gene sets defined by correlated expression profiles with cancer-associated genes

Zebrafish Phenotype v1.8 - data about zebrafish genotype - phenotype associations primarily obtained by curators from the literature

PANTHER Pathway v1.8 - primarily signaling pathways

Pathway Commons v1.8 - a collection of pathways from multiple sources

BioCyc Pathway v1.8 - metabolic pathways

MSigDB Pathway v1.8 - gene sets from pathway databases

Wiki Pathways v1.8 - zebrafish pathway data

MGI Expression Detected v1.8 - genes detected as expressed in data with a focus on gene expression during mouse development

MSigDB Perturbation v1.8 - gene sets that change their expression after genetic and chemical perturbations

Zebrafish Wildtype Expression v1.8 - genes detected as expressed in wildtype zebrafish during development

Transcription Factor Targets v1.8 - genes identified by a transcription factor ChIP-chip experiment

MSigDB Predicted Promoter Motifs v1.8 - gene sets that share a transcription factor binding motif

MSigDB miRNA Motifs v1.8 - gene sets that share a 3'-UTR microRNA binding motif

miRNA Targets v1.8 - genes that are downregulated in a microRNA overexpression experiment

InterPro v1.8 - protein domains, families and functional sites

TreeFam v1.8 - gene families of paralogs

HGNC Gene Families v1.8 - gene sets based on sequence similarity, data from the literature, and manual curation