Gene Ontology (GO)
GO Molecular Function v1.2
GO Biological Process v1.2
GO Cellular Component v1.2
Phenotype Data and Human Disease
Mouse Phenotype v1.2
- data about mouse genotype - phenotype associations primarily obtained by curators from the literature
MSigDB Cancer Neighborhood v1.2
- gene sets defined by correlated expression profiles with cancer-associated genes
MSigDB Cancer Modules v1.2
- gene sets with an altered expression in a variety of cancer conditions
Pathway Data
PANTHER Pathway v1.2
- primarily signaling pathways
Pathway Commons v1.2
- a collection of pathways from multiple sources
BioCyc Pathway v1.2
- metabolic pathways
MSigDB Pathway v1.2
- gene sets from pathway databases
Gene Expression
MGI Expression Detected v1.2
- genes detected as expressed in data with a focus on gene expression during mouse development
MSigDB Perturbation v1.2
- gene sets that change their expression after genetic and chemical perturbations
Regulatory Motifs
Transcription Factor Targets v1.2
- genes identified by a transcription factor ChIP-chip experiment
MSigDB Predicted Promoter Motifs v1.2
- gene sets that share a transcription factor binding motif
MSigDB miRNA Motifs v1.2
- gene sets that share a 3'-UTR microRNA binding motif
miRNA Targets v1.2
- genes that are downregulated in a microRNA overexpression experiment
Gene Families
InterPro v1.2
- protein domains, families and functional sites
TreeFam v1.2
- gene families of paralogs
HGNC Gene Families v1.2
- gene sets based on sequence similarity, data from the literature, and manual curation